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nf-core/scrnaseq

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

10x-genomics10xgenomicsalevinbustoolscellrangerkallistorna-seqsingle-cellstar-solo
These pages are for an old version of the pipeline (1.0.0). The latest stable release is 4.0.0 .
Launch version 1.0.0 https://github.com/nf-core/scrnaseq
  • Introduction
  • Usage
  • Output
  • Results
  • Releases
    • 4.0.0
    • 3.0.0
    • 2.7.1
    • 2.7.0
    • 2.6.0
    • 2.5.1
    • 2.5.0
    • 2.4.1
    • 2.4.0
    • 2.3.2
    • 2.3.1
    • 2.3.0
    • 2.2.0
    • 2.1.0
    • 2.0.0
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Output Results Releases
  • 4.0.0
  • 3.0.0
  • 2.7.1
  • 2.7.0
  • 2.6.0
  • 2.5.1
  • 2.5.0
  • 2.4.1
  • 2.4.0
  • 2.3.2
  • 2.3.1
  • 2.3.0
  • 2.2.0
  • 2.1.0
  • 2.0.0
  • 1.1.0
  • 1.0.0
  • dev

No nextflow_schema.json file found!

It seems like there is no nextflow_schema.json file with parameters defined for this version of the pipeline. Try a newer version.

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See the source code for this website on GitHub:
https://github.com/nf-core/website